Prothero, J. (2005).  Applied Synesthesia: A Technique for the Rapid Learning of Languages.
Prothero, J. (2001).  Cyber-Defense:  A Strategic Approach to Defending our Critical Information Infrastructure.  October 18, 2001.  Hypercerluean, Inc.
Prothero, J. (2001). Customer confusion can kill a Web site.  Puget Sound Business Journal, April 20, 2001 issue.  ps Tech: 28A.
Prothero, J. (1998). The Role of Rest Frames in Vection, Presence and Motion Sickness. Doctoral Dissertation, University of Washington.
Prothero, J.D., Draper, M.H., Furness, T.A. III, Parker, D.E. and Wells, M.J. (1997). Do Visual Background Manipulations Reduce Simulator Sickness?. In Proceedings of International Workshop on Motion Sickness.
Prothero, J. (1996). The Political Science of the Internet (Technical Report R-96-2). Seattle, Washington: University of Washington, Human Interface Technology Laboratory.
Prothero, J., Hoffman, H.G., Furness, T.A., Parker, D. and Wells, M. (1995). Foreground/Background Manipulations Affect Presence. In Proceedings of Human Factors and Ergonomics Society, pp. 1410-1414.
Prothero, J. and Hoffman, H. (1995). Widening the Field of View Increases the Sense of Presence in Immersive Virtual Environments (R-95-5). Seattle: University of Washington, Human Interface Technology Laboratory.
Prothero, J. (1994). A Survey of Interface Goodness Measures (R-94-1). Seattle: University of Washington, Human Interface Technology Laboratory.
Prothero, J., Parker, D., Furness, T. A., and Wells, M. (1995). Towards a Robust, Quantitative Measure of Presence. In Proceedings of Conference on Experimental Analysis and Measurement of Situational Awareness, pp. 359-366.
Prothero, J. (1993). The Treatment of Akinesia Using Virtual Images. Master's Thesis, University of Washington, College of Engineering.